MCP servers for
Biology Medicine and Bioinformatics
44 servers in the catalog, aggregated from the official MCP registry, the reference server repo, and the community. Showing 44.
01The servers
ajibadedapo/flowproof-mcp
ajibadedapo/flowproof-mcpRun reproducible bioinformatics pipelines (Nextflow) from an AI assistant, with verifiable Workflow Run RO-Crate provenance (container digests, tool versions, input/output checksums). `pip install flowproof-mcp`
pip install flowproof-mcpHomepage ↗ammawla/encode-toolkit
ammawla/encode-toolkitMCP server and Claude Plugin for a full ENCODE Project genomic data and analysis toolkit — search, download, track, and analyze functional genomics experiments.
cafferychen777/ChatSpatial
cafferychen777/chatspatialMCP server for spatial transcriptomics analysis with 60+ integrated methods covering cell annotation, deconvolution, spatial statistics, and visualization.
Crindo2/gph-mcp-server
crindo2/gph-mcp-serverHealthcare service vendor matching for medical practices: 76,000+ curated vendors across 25 categories (billing, credentialing, EHR, compliance, legal) in all 50 US states.
davidmosiah/google-health-mcp
davidmosiah/google-health-mcpLocal-first Google Health API v4 MCP server for Fitbit, Pixel Watch, activity, sleep, heart, nutrition and reconciled health streams.
davidmosiah/wellness-cgm-mcp
davidmosiah/wellness-cgm-mcpLocal-first continuous glucose monitor MCP server for Dexcom Developer API and FreeStyle Libre via LibreLink Up.
davidmosiah/wellness-nourish
davidmosiah/wellness-nourishZero-credential nutrition and hydration MCP server with food search, barcode lookup, meal estimation, intake logs and daily summaries.
dnaerys/onekgpd-mcp
dnaerys/onekgpd-mcpericblair1903/nutrients-mcp
ericblair1903/nutrients-mcpNutrition analysis from a food photo or a plain-text description. Returns calories, macros, vitamins, minerals, allergens, and dietary flags in about a second. Install via `npx -y nutrients-mcp`.
npx -y nutrients-mcpHomepage ↗fulcradynamics/fulcra-context-mcp
fulcradynamics/fulcra-context-mcpMCP server for accessing personal health and biometric data including sleep stages, heart rate, HRV, glucose, workouts, calendar, and location via the Fulcra Life API with OAuth2 consent.
genomoncology/biomcp
genomoncology/biomcpBiomedical research MCP server providing access to PubMed, ClinicalTrials.gov, and MyVariant.info.
healthchainai/HealthChain
healthchainai/healthchainTyped, validated FHIR tools for healthcare AI agents — build, read, validate, and code FHIR resources from a patient bundle, with terminology lookup and machine-readable validation reports built for fix-and-retry. `pip install healthchain[mcp]`
pip install healthchainHomepage ↗helena-bioinformatics/noodle-mcp
helena-bioinformatics/noodle-mcpRead-only biomedical literature discovery over a public PubMed-derived corpus: natural-language and PMID/DOI/PMCID search, source-linked publication records, and bounded citation or semantic graph traversal with provenance. Hosted Streamable HTTP endpoint; no account or API key required.
HelixGenomics/Genomic-Agent-Discovery
helixgenomics/genomic-agent-discoveryMulti-agent MCP server for genomic analysis — specialized AI agents analyze raw DNA files across 16 databases (ClinVar, GWAS, gnomAD, CPIC, AlphaMissense, and more) and coordinate findings through shared MCP tools. Privacy-first, runs locally.
hlydecker/ucsc-genome-mcp
hlydecker/ucsc-genome-mcpMCP server to interact with the UCSC Genome Browser API, letting you find genomes, chromosomes, and more.
JamesANZ/medical-mcp
jamesanz/medical-mcpAn MCP server that provides access to medical information, drug databases, and healthcare resources. Enables AI assistants to query medical data, drug interactions, and clinical guidelines.
kushaim/practice-fusion-mcp
kushaim/practice-fusion-mcpFHIR-first, read-only MCP server for the Practice Fusion EHR. Search patients and review appointments, conditions, medications, and lab results. SMART backend-services auth, audit-logged, HIPAA-conscious.
longevity-genie/biothings-mcp
longevity-genie/biothings-mcpMCP server to interact with the BioThings API, including genes, genetic variants, drugs, and taxonomic information.
longevity-genie/gget-mcp
longevity-genie/gget-mcpMCP server providing a powerful bioinformatics toolkit for genomics queries and analysis, wrapping the popular `gget` library.
longevity-genie/opengenes-mcp
longevity-genie/opengenes-mcpMCP server for a queryable database for aging and longevity research from the OpenGenes project.
longevity-genie/synergy-age-mcp
longevity-genie/synergy-age-mcpMCP server for the SynergyAge database of synergistic and antagonistic genetic interactions in longevity.
mgnirck/lecka-mcp
mgnirck/lecka-mcpRace nutrition planning for endurance athletes. Calculates carb, sodium and fluid targets for marathons, ultras, cycling and triathlons. Returns personalised Lecka product recommendations by race type, conditions and athlete weight. [](https://glama.ai/mcp/servers/mgnirck/lecka-mcp)
musharna/plant-genomics-mcp
musharna/plant-genomics-mcp32 tools for plant-genomics locus lookup across 11 public backends (Ensembl Plants, Phytozome, UniProtKB, KEGG, STRING-DB, Gramene, Europe PMC, QuickGO, NCBI BLAST, ATTED-II, BAR). Single-locus, parallel-batch, and cross-source synthesis variants; JSON output schemas and EDAM ontology tags on every tool. `pipx install plant-genomics-mcp`.
MyMedi-AI/mymedi-ai-mcp-server
mymedi-ai/mymedi-ai-mcp-serverHealthcare billing AI for agents: ICD-10/CPT/HCPCS code lookup (81,769 codes with RVU + OPPS pricing), prior auth prediction, medical NER, claims validation, denial-risk scoring, HIPAA compliance auditing, and NPI/drug enrichment. 20 tools, 10 free credits then pay-per-call via credits or anonymous USDC (x402). `npx @mymedi-ai/mcp-server`
neptun2000/heor-agent-mcp
neptun2000/heor-agent-mcpHEOR (Health Economics and Outcomes Research) MCP server with 7 tools for literature search across 41 medical data sources (PubMed, NICE, CADTH, ICER, etc.), cost-effectiveness modeling (Markov/PartSA/PSA), and HTA dossier preparation for pharmaceutical and biotech teams.
NyxToolsDev/dicom-hl7-mcp-server
nyxtoolsdev/dicom-hl7-mcp-serverThe only MCP server bridging DICOM, HL7v2, and FHIR in one package. Cross-standard mapping, Mirth Connect channel generation, vendor private tag decoding (GE, Siemens, Philips), and integration pattern knowledge. Built by a 19-year healthcare IT veteran. `pip install dicom-hl7-mcp`
pip install dicom-hl7-mcpHomepage ↗OHNLP/omop_mcp
ohnlp/omop_mcpMap clinical terminology to OMOP concepts using LLMs for healthcare data standardization and interoperability.
PantelisGeorgiadis/dicomweb-mcp-server
pantelisgeorgiadis/dicomweb-mcp-serverA DICOMweb MCP server that exposes a DICOMweb-compliant DICOM archive to AI assistants, enabling search of studies, series and instances, metadata inspection, structured report reading, encapsulated PDF text extraction, and frame rendering.
pkotecha-eng/aria-mcp-server
pkotecha-eng/aria-mcp-serverClinical research MCP server for trial coordinators and life sciences teams. Real-time access to PubMed (35M+ papers) and ClinicalTrials.gov (400K+ trials). No API key required.
pubspro/pubmed-search
pubspro/pubmed-searchSearch PubMed and summarize biomedical literature, designed for AI health agents.
Rajskij/oura-mcp
rajskij/oura-mcpAsk your Oura Ring about sleep, readiness, activity, stress and heart rate in ChatGPT or Claude, in any language. Read-only, token-efficient, self-hosted; 10 task-oriented tools grouped by how people actually ask.
salwks/mcp-techTrend
salwks/mcp-techtrendMulti-source academic + code + medical-regulatory trend monitoring (arXiv, PubMed, GitHub, Hugging Face, openFDA 510(k)/Recalls). Newspaper-style briefings, per-domain tuning, sandbox-safe Python launcher.
SEOSiri-Official/biorobotics
seosiri-official/bioroboticsA stateless, deterministic Bio-Robotics Core Engine converting biological data (UniProt API) to Cartesian G-code coordinates using the Model Context Protocol. 🐍 🏠 🍎 🪟 🐧
SidneyBissoli/medical-terminologies-mcp
sidneybissoli/medical-terminologies-mcpUnified MCP server for ICD-11 (WHO), LOINC, RxNorm, MeSH (NLM), ATC, CID-10 (Brazilian DataSUS), and optional SNOMED CT. 28 tools (34 with SNOMED) with `structuredContent` + `outputSchema` on every default tool. Hosted on Cloudflare Workers, listed on Smithery, and on npm.
smaniches/alphafold-sovereign-mcp
smaniches/alphafold-sovereign-mcpAlphaFold MCP server integrating AlphaFold DB with eight additional public biomedical data sources, backed by a local SQLite knowledge graph for structural-confidence, variant, disease/phenotype, drug-target, and orthology workflows. `uvx alphafold-sovereign-mcp`
smaniches/uniprot-mcp
smaniches/uniprot-mcpAuditable UniProt MCP server: 41 tools over the UniProt knowledgebase (entries, features, variants, PTMs, GO terms, cross-references) with per-query SHA-256 provenance and offline replay. `uvx uniprot-mcp-server`
tatsuju/opdstar-nhi-mcp
tatsuju/opdstar-nhi-mcpTaiwan's first public MCP server for National Health Insurance (NHI) data — 234 rejection codes, 1,497 ICD-10→procedure mappings across 20 specialties, audit indicators (008/014/027/P043), and semantic wiki search over 8,232 chunks of official NHI documentation. Powered by [OPDSTAR](https://opdstar.com). Install: `npx @opdstar/nhi-mcp`.
the-momentum/apple-health-mcp-server
the-momentum/apple-health-mcp-serverAn MCP server that provides access to exported data from Apple Health. Data analytics included.
the-momentum/fhir-mcp-server
the-momentum/fhir-mcp-serverMCP Server that connects AI agents to FHIR servers. One example use case is querying patient history in natural language.
thehealthai/clarity-mcp
thehealthai/clarity-mcpCondition-aware ingredient, product & supplement safety for agents, with provenance on every answer — a verdict, an evidence tier (Gold/Silver/Bronze), and a verifiable citation — across breastfeeding, pregnancy, histamine/MCAS, rosacea, HS, allergy and fertility lenses. 9 tools incl. validate_claim (fact-check a claim against curated cited sources) and check_recall (FDA/consumer recall lookup by brand with Class I flagging and source URLs). Hosted at mcp.healthai.com.
thehealthai/fda-risk-radar-mcp
thehealthai/fda-risk-radar-mcpThe MCP server behind [Constat](https://constat.dev): FDA & NHTSA regulatory-risk intelligence for agents — device compliance risk by 3-letter product code, parsed 510(k) premarket evidence with verbatim source quotes, predicate chains, postmarket drift signals, clearance-to-payment reimbursement pathways (NTAP/CPT/CMS), and NHTSA vehicle safety. 14 tools. Decision support, not regulatory advice. Hosted at constat.dev/api/mcp.
thelongevityvault/decoder-3am-mcp
thelongevityvault/decoder-3am-mcpSleep disruption cause classifier using The Longevity Vault's 5-cause framework. Identifies the biological mechanism behind 3am wakeups from symptom descriptions, with tracked links to the full interactive 3AM Decoder.
wjgoarxiv/pymol-mcp
wjgoarxiv/pymol-mcpHeadless PyMOL for molecular visualization, GROMACS/LAMMPS MD trajectories, and clathrate-hydrate cage analysis: H-bond networks, F3/F4 order parameters, and TRACE cage perception + occupancy.
wso2/fhir-mcp-server
wso2/fhir-mcp-serverModel Context Protocol server for Fast Healthcare Interoperability Resources (FHIR) APIs. Provides seamless integration with FHIR servers, enabling AI assistants to search, retrieve, create, update, and analyze clinical healthcare data with SMART-on-FHIR authentication support.
02Other categories
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